*corresponding author; †equal contribution.

44. Yang L†, Sun N†, Zeng H†, Wang Y†, Chen W, Ding Z, Liu Y, Wang J, Meng M, Shen Y, Kang J, Ma X, Lv W, Chen J, Meyer A*, Guo Baocheng*, He S*. (2023) Enlarged fins of Tibetan catfish provide new evidence of adaptation to high plateau. SCIENCE CHINA Life Sciences, doi: 10.1007/s11427-022-2253-7, in press. [link]

43. Du Y†, Tu W†, Yang L, Gu D, Guo Baocheng*, Liu X*. (2023) Review of the impacts of invasive alien vertebrates on biodiversity. SCIENTIA SINICA Vitae, doi: 10.1360/SSV-2022-0033, in press. (in Chinese) [link]

42. Wang Y, Wang Y, Cheng X, Ding Y, Wang C, Merilä J, Guo Baocheng*. (2023) Prevalent introgression underlies convergent evolution in the diversification of Pungitius sticklebacks. Molecular Biology and Evolution, 40(2):msad026. [link]

41. Xie W†, Wen Z†, Song K, Guo Baocheng*, Fang Y, Sun Y*. (2023) A global freshwater assessment of establishment risk for the invasive Alligator Gar (Atractosteus spatula), and the risks to freshwater ecosystems in China. Zoological Research, 44:90-93. [link]

40. Wang Y, Wang Y, Zhao Y, Kravchenko A, Merilä J, Guo Baocheng*. (2022) Phylogenomics of Northeast Asian Pungitius sticklebacks. Diversity and Distributions, 28:2610–2621. [link]

39. Ge D*, Qu Y*, Deng T, Thuiller W, Fišer C, Ericson PGP, Guo Baocheng, de la Sancha NU, von der Heyden S, Hou Z, Li J, Abramov A, Vogler AP, Jønsson KA, Mittermeier R. (2022) New progress in exploring the mechanisms underlying extraordinarily high biodiversity in global hotspots and their implications for conservation. Diversity and Distributions, 28:2448-2458. [link]

38. Wang Y & Guo Baocheng*. (2022) Distribution status of Pungitius sticklebacks in China. Chinese Journal of Zoology, 57:787-798. (in Chinese) [link]

37. Jin L, Li Z, Wang C, Wang Yingnan, Li X, Yang J, Zhao Y, Guo Baocheng*. Contrasting population differentiation in two sympatric Triplophysa loaches on the Qinghai-Tibet Plateau. Frontiers in Genetics, 13:958076. [link]

36. Guo, Baocheng*, Zou M, Sakamoto T, and Innan H*. (2022) Functional innovation through gene duplication followed by frameshift mutation. Genes, 13:190. [link]

35. Jin L & Guo Baocheng*. (2021). Detecting adaptive loci with population genomic data. Bio-101: e1010627. Doi: 10.21769/BioProtoc.1010627. (in Chinese) [link]

34. Jin L & Guo Baocheng*. (2021). Detecting loci underlying local adaptation using environmental association analysis. Bio-101: e1010615. Doi: 10.21769/BioProtoc.1010615. (in Chinese) [link]

33. Wang Y & Guo Baocheng*. (2021) The divergence of alternative splicing between ohnologs in teleost fishes. BMC Ecology and Evolution, 21:98. [link]

32. Kemppainen P*, Li Z, Rastas P, Löytynoja A, Fang B, Yang J, Guo Baocheng, Shikano T, Merilä J. (2021) Genetic population structure constrains local adaptation in sticklebacks. Molecular Ecology, 30:1946–1961. [link]

Selected as cover story. [link]

Commentary by Yamasaki & Kitano. (2021) Multiple paths to the same destination: influence of gene flow on convergent evolution. Molecular Ecology, 30:1939–1942. [link]

Preprint: bioRxiv, 2020.01.17.908970. [link]

31. Wang Y, Zhao Y, Wang Y, Li Z, Guo Baocheng*, Merilä J. (2020) Population transcriptomics reveals weak parallel genetic basis in repeated marine and freshwater divergence in nine-spined sticklebacks. Molecular Ecology, 29:1642-1656. [link]

30. Yang T, Meng W*, Guo Baocheng*. (2020) Population genomic analysis of two endemic schizothoracins reveals their genetic differences and adaptation to altitude and temperature. Animals, 10: 447. [link]

29. Li X & Guo Baocheng*. (2020) Substantially adaptive potential in polyploid cyprinid fishes: evidence from biogeographic, phylogenetic and genomic studies. Proceedings of the Royal Society B: Biological Sciences, 287: 20193008. [link]

28. Varadharajan S*, Rastas P, Löytynoja A, Matschiner M, Calboli FCF, Guo Baocheng, Nederbragt AJ, Jakobsen KS*, Merilä J. (2019) A high-quality assembly of the nine-spined stickleback (Pungitius pungitius) genome. Genome Biology and Evolution, 11:3291-3308. [link]

Preprint: bioRxiv, 741751. [link]

27. Wang Y & Guo Baocheng*. (2019) Adaption to extreme environments: a perspective from fish genomics. Reviews in Fish Biology and Fisheries, 29:735–747. [link]

26. Guo Baocheng†, Fang B†, Shikano T, Momigliano P, Wang C, Kravchenko A, Merilä J*. (2019) A phylogenomic perspective on diversity, hybridization and evolutionary affinities in the stickleback genus Pungitius. Molecular Ecology, 28:4046-4064. [link]

25. Nielsen ES, Henriques R, Toonen RT, Knapp I, Guo Baocheng, von der Heyden S*. (2018) Complex signatures of genomic variation of two non-model marine species in a homogeneous environment. BMC Genomics, 19:347. [link]

24. Guo Baocheng*. (2017) Complex genes are preferentially retained after whole-genome duplication in teleost fish. Journal of Molecular Evolution, 84:253-258. [link]

23. Li Z*, Guo Baocheng, Yang J, Herczeg G, Gonda A, Balázs G, Shikano T, Calboli FCF, Merilä J. (2017) Deciphering the genomic architecture of the stickleback brain with a novel multi-locus gene-mapping approach. Molecular Ecology, 26:1557-1575. [link]

Commentary by Jon Slate. (2017) Robust inference of genetic architecture in mapping studies. Molecular Ecology, 26:1453-1455. [link]

22. Guo Baocheng*, Li Z, Merilä J. (2016) Population genomic evidence for adaptive differentiation in the Baltic Sea herring. Molecular Ecology, 25:3884–3900. [link]

21. Guo Baocheng, Lu D, Liao WB*, Merilä J. (2016) Genome-wide scan for adaptive differentiation along altitudinal gradient in the Andrew’s toad Bufo andrewsi. Molecular Ecology, 25:2833-2852. [link]

20. Yang J, Guo Baocheng*, Shikano T, Liu X*, Merilä J. (2016) Quantitative trait locus analysis of body shape divergence in nine-spined sticklebacks based on high-density SNP-panel. Scientific Reports, 6:26632. [link]

19. Rastas P†, Calbol FCF†, Guo Baocheng, Shikano T, Merilä J*. (2016) Construction of ultra-dense linkage maps using Lep-MAP2 as exemplified with stickleback F2 recombinant crosses. Genome Biology and Evolution, 8:78-93. [link]

Selected as cover story. [link]

18. Guo Baocheng, Shikano T, Vukic J, Sanda R, Merilä J*. (2016) Complete mitochondrial genome of the Ukrainian nine-spined stickleback Pungitius platygaster (Gasterosteiformes, Gasterosteidae). Mitochondrial DNA Part B: Resources, 1:68-69. [link]

17. Guo Baocheng, Shikano T, Wang C, Merilä J*. (2016) Complete mitochondrial genome of the smoot-tailed nine-spined stickleback Pungitius laevis (Gasterosteiformes, Gasterosteidae). Mitochondrial DNA Part B: Resources, 1:70-71. [link]

16. Guo Baocheng, Toli E, Merilä J*. (2016) Complete mitochondrial genome of the nine-spined stickleback Pungitius pungitius (Gasterosteiformes, Gasterosteidae). Mitochondrial DNA Part B: Resources, 1:72-73. [link]

15. Shikano T, Guo Baocheng, Vukic J, Sanda R, Merilä J*. (2016) Complete mitochondrial genome of the Greek nine-spined stickleback Pungitius hellenicus (Gasterosteiformes, Gasterosteidae). Mitochondrial DNA Part B: Resources, 1:66-67. [link]

14. Shikano T, Guo Baocheng, Merilä J*. (2016) Complete mitochondrial genome of the Shakhalin nine-spined stickleback Pungitius tymensis (Gasterosteiformes, Gasterosteidae). Mitochondrial DNA: Resources Part B, 1:74-75. [link]

13. Guo Baocheng*, DeFaveri J, Sotelo G, Nair A, Merilä J. (2015) Population genomic evidence for adaptive differentiation in Baltic Sea three-spined sticklebacks. BMC Biology, 13:19. [link]

12. Zou M*, Guo Baocheng, Ma X. (2014) Characterizing the transcriptome of yellow-cheek carp (Elopichthys bambusa) enables evolutionary analyses within endemic East Asian Cyprinidae. Gene, 547:267-272. [link]

11. Guo Baocheng*, Chain FJ, Bornberg-Bauer E, Leder EH, Merilä J. (2013) Genomic divergence between nine- and three-spined sticklebacks. BMC Genomics, 14:756. [link]

10. Guo Baocheng, Zou M, Wagner A*. (2012) Pervasive indels and their evolutionary dynamics after the fish-specific genome duplication. Molecular Biology and Evolution, 29:3005-3022. [link]

9. Zou M, Guo Baocheng, Tao W, Arratia G, He S*. (2012) Integrating multi-origin expression data improves resolution of the deep phylogeny of ray-finned fish (Actinopterygii). Scientific Reports, 2:665. [link]

8. Guo Baocheng, Wagner A, He S*. (2011) Duplicated gene evolution following whole-genome duplication in teleost Fish. Pp. 27-36. In: Felix Friedberg (Ed.), Gene Duplication. InTech, Rijeka, Croatia. [link]

7. Zou M, Guo Baocheng, He S*. (2011) The roles and evolutionary patterns of intronless genes in deuterostomes. Comparative and Functional Genomics, 2011:680673. [link]

6. Guo Baocheng, Zou M, Gan X, He S*. (2010) Genome size evolution in pufferfish: an insight from BAC clone-based Diodon holacanthus genome sequencing. BMC Genomics, 11:396. [link]

5. Guo Baocheng, Gan X, He S*. (2010) Hox genes of the Japanese eel Anguilla japonica and Hox cluster evolution in teleosts. Journal of Experimental Zoology Part B: Molecular Development and Evolution, 314:135-147. [link]

4. Guo Baocheng, Tong C, He S*. (2009) Sox genes evolution in closely related young tetraploid cyprinid fishes and their diploid relative. Gene, 439:102-112. [link]

3. Tong C, Guo Baocheng, He S*. (2009) Bead-probe complex capture a couple of SINE and LINE family from genomes of two closely related species of East Asian cyprinid directly using magnetic separation. BMC Genomics, 10:83. [link]

2. Li Z, Guo Baocheng, Li J, He S*, Chen Y. (2008) Bayesian mixed models and divergence time estimation of Chinese cavefishes (Cyprinidae: Sinocyclocheilus). Chinese Science Bulletin, 53:2342-2352. [link]

1. Guo Baocheng, Li J, Tong C, He S*. 2008. Cloning and sequence analysis of Sox genes in a tetraploid cyprinid fish, Tor douronensis. Chinese Science Bulletin, 53:1988-1995. [link]

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